Publications

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Book
Penchoff, D. A., T. L. Windus, and C. C. Peterson, “Rare Earth Elements and Actinides: Progress in Computational Science Applications,” ACS Symposium Series, vol. 1388, Washington, DC, American Chemical Society, October 2021.
Penchoff, D. A., T. L. Windus, and C. C. Peterson, “Rare Earth Elements and Actinides: Progress in Computational Science Applications,” ACS Symposium Series, vol. 1388, Washington, DC, American Chemical Society, October 2021.
Book Chapter
Abdelfattah, A., S. Tomov, and J. Dongarra, “Batch QR Factorization on GPUs: Design, Optimization, and Tuning,” Lecture Notes in Computer Science, vol. 13350, Cham, Springer International Publishing, June 2022.
Penchoff, D. A., E. Valeev, H. Jagode, P. Luszczek, A. Danalis, G. Bosilca, R. J. Harrison, J. Dongarra, and T. L. Windus, “An Introduction to High Performance Computing and Its Intersection with Advances in Modeling Rare Earth Elements and Actinides,” Rare Earth Elements and Actinides: Progress in Computational Science Applications, vol. 1388, Washington, DC, American Chemical Society, pp. 3-53, October 2021.
Parker, S., J. Mellor-Crummey, D. H. Ahn, H. Jagode, H. Brunst, S. Shende, A. D. Malony, D. DelSignore, R. Tschuter, R. Castain, et al., “Performance Analysis and Debugging Tools at Scale,” Exascale Scientific Applications: Scalability and Performance Portability: Chapman & Hall / CRC Press, pp. 17-50, November 2017.
Penchoff, D. A., C. B. Sims, and T. L. Windus, “Rare Earth Elements and Critical Materials: Uses and Availability,” Rare Earth Elements and Actinides: Progress in Computational Science Applications, vol. 1388, Washington, DC, American Chemical Society, pp. 63-74, October 2021.
Conference Paper
Luo, X., W. Wu, G. Bosilca, T. Patinyasakdikul, L. Wang, and J. Dongarra, “ADAPT: An Event-Based Adaptive Collective Communication Framework,” The 27th International Symposium on High-Performance Parallel and Distributed Computing (HPDC '18), Tempe, Arizona, ACM Press, June 2018.  (493.65 KB)
Thiyagalingam, J., G. von Laszewski, J. Yin, M. Emani, J. Papay, G. Barrett, P. Luszczek, A. Tsaris, C. Kirkpatrick, F. Wang, et al., “AI Benchmarking for Science: Efforts from the MLCommons Science Working Group,” Lecture Notes in Computer Science, vol. 13387: Springer International Publishing, pp. 47 - 64, January 2023.
Gates, M., J. Kurzak, P. Luszczek, Y. Pei, and J. Dongarra, “Autotuning Batch Cholesky Factorization in CUDA with Interleaved Layout of Matrices,” Parallel and Distributed Processing Symposium Workshops (IPDPSW), Orlando, FL, IEEE, June 2017.
Pei, Y., Q. Cao, G. Bosilca, P. Luszczek, V. Eijkhout, and J. Dongarra, “Communication Avoiding 2D Stencil Implementations over PaRSEC Task-Based Runtime,” 2020 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), New Orleans, LA, IEEE, May 2020.  (1.33 MB)
Aupy, G., A. Benoit, L. Pottier, P. Raghavan, Y. Robert, and M. Shantharam, “Co-Scheduling Algorithms for Cache-Partitioned Systems,” 19th Workshop on Advances in Parallel and Distributed Computational Models, Orlando, FL, IEEE Computer Society Press, May 2017.  (584.76 KB)
Aupy, G., A. Benoit, B. Goglin, L. Pottier, and Y. Robert, “Co-Scheduling HPC Workloads on Cache-Partitioned CMP Platforms,” Cluster 2018, Belfast, UK, IEEE Computer Society Press, September 2018.  (423.75 KB)
Haidar, A., J. Kurzak, G. Pichon, and M. Faverge, “ A Data Flow Divide and Conquer Algorithm for Multicore Architecture,” 29th IEEE International Parallel & Distributed Processing Symposium (IPDPS), Hyderabad, India, IEEE, May 2015.  (535.44 KB)
Pei, Y., G. Bosilca, I. Yamazaki, A. Ida, and J. Dongarra, “Evaluation of Programming Models to Address Load Imbalance on Distributed Multi-Core CPUs: A Case Study with Block Low-Rank Factorization,” PAW-ATM Workshop at SC19, Denver, CO, ACM, November 2019.  (4.51 MB)
Cao, Q., Y. Pei, K. Akbudak, A. Mikhalev, G. Bosilca, H. Ltaief, D. Keyes, and J. Dongarra, “Extreme-Scale Task-Based Cholesky Factorization Toward Climate and Weather Prediction Applications,” Platform for Advanced Scientific Computing Conference (PASC20), Geneva, Switzerland, ACM, June 2020.  (2.71 MB)
Cao, Q., R. Alomairy, Y. Pei, G. Bosilca, H. Ltaief, D. Keyes, and J. Dongarra, “A Framework to Exploit Data Sparsity in Tile Low-Rank Cholesky Factorization,” IEEE International Parallel and Distributed Processing Symposium (IPDPS), July 2022.  (1.03 MB)
Patinyasakdikul, T., D. Eberius, G. Bosilca, and N. Hjelm, “Give MPI Threading a Fair Chance: A Study of Multithreaded MPI Designs,” IEEE Cluster, Albuquerque, NM, IEEE, September 2019.  (220.84 KB)
Anzt, H., E. Ponce, G. D. Peterson, and J. Dongarra, “GPU-accelerated Co-design of Induced Dimension Reduction: Algorithmic Fusion and Kernel Overlap,” 2nd International Workshop on Hardware-Software Co-Design for High Performance Computing, Austin, TX, ACM, November 2015.  (1.46 MB)
Anzt, H., E. Ponce, G. D. Peterson, and J. Dongarra, “GPU-accelerated Co-design of Induced Dimension Reduction: Algorithmic Fusion and Kernel Overlap,” 2nd International Workshop on Hardware-Software Co-Design for High Performance Computing, Austin, TX, ACM, November 2015.  (1.46 MB)
Luo, X., W. Wu, G. Bosilca, Y. Pei, Q. Cao, T. Patinyasakdikul, D. Zhong, and J. Dongarra, “HAN: A Hierarchical AutotuNed Collective Communication Framework,” IEEE Cluster Conference, Kobe, Japan, Best Paper Award, IEEE Computer Society Press, September 2020.  (764.05 KB)
Luo, X., W. Wu, G. Bosilca, Y. Pei, Q. Cao, T. Patinyasakdikul, D. Zhong, and J. Dongarra, “HAN: A Hierarchical AutotuNed Collective Communication Framework,” IEEE Cluster Conference, Kobe, Japan, Best Paper Award, IEEE Computer Society Press, September 2020.  (764.05 KB)
Newburn, C. J., G. Bansal, M. Wood, L. Crivelli, J. Planas, A. Duran, P. Souza, L. Borges, P. Luszczek, S. Tomov, et al., “Heterogeneous Streaming,” The Sixth International Workshop on Accelerators and Hybrid Exascale Systems (AsHES), IPDPS 2016, Chicago, IL, IEEE, May 2016.  (2.73 MB)
Cao, Q., Y. Pei, K. Akbudak, G. Bosilca, H. Ltaief, D. Keyes, and J. Dongarra, “Leveraging PaRSEC Runtime Support to Tackle Challenging 3D Data-Sparse Matrix Problems,” 35th IEEE International Parallel & Distributed Processing Symposium (IPDPS 2021), Portland, OR, IEEE, May 2021.  (1.08 MB)
Malony, A. D., S. Biersdorff, S. Shende, H. Jagode, S. Tomov, G. Juckeland, R. Dietrich, D. Poole, and C. Lamb, “Parallel Performance Measurement of Heterogeneous Parallel Systems with GPUs,” International Conference on Parallel Processing (ICPP'11), Taipei, Taiwan, ACM, September 2011.  (1.41 MB)
Cao, Q., Y. Pei, T. Herault, K. Akbudak, A. Mikhalev, G. Bosilca, H. Ltaief, D. Keyes, and J. Dongarra, “Performance Analysis of Tile Low-Rank Cholesky Factorization Using PaRSEC Instrumentation Tools,” Workshop on Programming and Performance Visualization Tools (ProTools 19) at SC19, Denver, CO, ACM, November 2019.  (429.55 KB)
Benoit, A., S. Perarnau, L. Pottier, and Y. Robert, “A Performance Model to Execute Workflows on High-Bandwidth Memory Architectures,” The 47th International Conference on Parallel Processing (ICPP 2018), Eugene, OR, IEEE Computer Society Press, August 2018.  (868.44 KB)
Benoit, A., S. Perarnau, L. Pottier, and Y. Robert, “A Performance Model to Execute Workflows on High-Bandwidth Memory Architectures,” The 47th International Conference on Parallel Processing (ICPP 2018), Eugene, OR, IEEE Computer Society Press, August 2018.  (868.44 KB)
Moore, S., D. Cronk, F. Wolf, A. Purkayastha, P. J. Teller, R. Araiza, G. Aguilera, and J. Nava, “Performance Profiling and Analysis of DoD Applications using PAPI and TAU,” Proceedings of DoD HPCMP UGC 2005, Nashville, TN, IEEE, June 2005.  (322.56 KB)
Herault, T., A. Bouteiller, G. Bosilca, M. Gamell, K. Teranishi, M. Parashar, and J. Dongarra, “Practical Scalable Consensus for Pseudo-Synchronous Distributed Systems,” The International Conference for High Performance Computing, Networking, Storage and Analysis (SC15), Austin, TX, ACM, November 2015.  (550.96 KB)
Aggarwal, I., P. Nayak, A. Kashi, and H. Anzt, “Preconditioners for Batched Iterative Linear Solvers on GPUs,” Smoky Mountains Computational Sciences and Engineering Conference, vol. 169075: Springer Nature Switzerland, pp. 38 - 53, January 2023.
Aggarwal, I., P. Nayak, A. Kashi, and H. Anzt, “Preconditioners for Batched Iterative Linear Solvers on GPUs,” Smoky Mountains Computational Sciences and Engineering Conference, vol. 169075: Springer Nature Switzerland, pp. 38 - 53, January 2023.
Gainaru, A., B. Goglin, V. Honoré, P. Raghavan, G. Pallez, P. Raghavan, Y. Robert, and H. Sun, “Reservation and Checkpointing Strategies for Stochastic Jobs,” 34th IEEE International Parallel and Distributed Processing Symposium (IPDPS 2020), New Orleans, LA, IEEE Computer Society Press, May 2020.  (692.4 KB)
Du, Y., L. Marchal, G. Pallez, and Y. Robert, “Robustness of the Young/Daly Formula for Stochastic Iterative Applications,” 49th International Conference on Parallel Processing (ICPP 2020), Edmonton, AB, Canada, ACM Press, August 2020.  (1.11 MB)
Mattson, T., D. Bader, J. Berry, A. Buluc, J. Dongarra, C. Faloutsos, J. Feo, J. Gilbert, J. Gonzalez, B. Hendrickson, et al., “Standards for Graph Algorithm Primitives,” 17th IEEE High Performance Extreme Computing Conference (HPEC '13), Waltham, MA, IEEE, September 2013.  (108.86 KB)
Mattson, T., D. Bader, J. Berry, A. Buluc, J. Dongarra, C. Faloutsos, J. Feo, J. Gilbert, J. Gonzalez, B. Hendrickson, et al., “Standards for Graph Algorithm Primitives,” 17th IEEE High Performance Extreme Computing Conference (HPEC '13), Waltham, MA, IEEE, September 2013.  (108.86 KB)
Eberius, D., T. Patinyasakdikul, and G. Bosilca, “Using Software-Based Performance Counters to Expose Low-Level Open MPI Performance Information,” EuroMPI, Chicago, IL, ACM, September 2017.  (745.58 KB)
Conference Proceedings
Beck, M., J. Dongarra, J. Huang, T. Moore, and J. Plank, “Active Logistical State Management in the GridSolve/L,” 4th International Symposium on Cluster Computing and the Grid (CCGrid 2004)(submitted), Chicago, Illinois, January 2004.  (123.69 KB)
Benoit, A., Y. Du, T. Herault, L. Marchal, G. Pallez, L. Perotin, Y. Robert, H. Sun, and F. Vivien, “Checkpointing à la Young/Daly: An Overview,” IC3-2022: Proceedings of the 2022 Fourteenth International Conference on Contemporary Computing, Noida, India, ACM Press, pp. 701-710, August 2022.  (639.77 KB)
Benoit, A., Y. Du, T. Herault, L. Marchal, G. Pallez, L. Perotin, Y. Robert, H. Sun, and F. Vivien, “Checkpointing à la Young/Daly: An Overview,” IC3-2022: Proceedings of the 2022 Fourteenth International Conference on Contemporary Computing, Noida, India, ACM Press, pp. 701-710, August 2022.  (639.77 KB)
Bland, W., P. Du, A. Bouteiller, T. Herault, G. Bosilca, and J. Dongarra, “A Checkpoint-on-Failure Protocol for Algorithm-Based Recovery in Standard MPI,” 18th International European Conference on Parallel and Distributed Computing (Euro-Par 2012) (Best Paper Award), Rhodes, Greece, Springer-Verlag, August 2012.  (289.32 KB)
Roche, K., and J. Dongarra, “Deploying Parallel Numerical Library Routines to Cluster Computing in a Self Adapting Fashion,” Parallel Computing: Advances and Current Issues:Proceedings of the International Conference ParCo2001, London, England, Imperial College Press, January 2002.  (381.89 KB)
Haidar, A., A. Abdelfattah, M. Zounon, P. Wu, S. Pranesh, S. Tomov, and J. Dongarra, “The Design of Fast and Energy-Efficient Linear Solvers: On the Potential of Half-Precision Arithmetic and Iterative Refinement Techniques,” International Conference on Computational Science (ICCS 2018), vol. 10860, Wuxi, China, Springer, pp. 586–600, June 2018.  (487.88 KB)
Bouteiller, A., S. Pophale, S. Boehm, M. B. Baker, and M G. Venkata, “Evaluating Contexts in OpenSHMEM-X Reference Implementation,” OpenSHMEM and Related Technologies. Big Compute and Big Data Convergence, Cham, Springer International Publishing, pp. 50–62, 2018.
Bouteiller, A., S. Pophale, S. Boehm, M. B. Baker, and M G. Venkata, “Evaluating Contexts in OpenSHMEM-X Reference Implementation,” OpenSHMEM and Related Technologies. Big Compute and Big Data Convergence, Cham, Springer International Publishing, pp. 50–62, 2018.
Gao, Y., G. Pallez, Y. Robert, and F. Vivien, “Evaluating Task Dropping Strategies for Overloaded Real-Time Systems (Work-In-Progress),” 42nd Real Time Systems Symposium (RTSS): IEEE Computer Society Press, 2021.  (217.13 KB)
YarKhan, A., and J. Dongarra, “Experiments with Scheduling Using Simulated Annealing in a Grid Environment,” Grid Computing - GRID 2002, Third International Workshop, vol. 2536, Baltimore, MD, Springer, pp. 232-242, November 2002.  (66.91 KB)
Dongarra, J., S. Moore, G. D. Peterson, S. Tomov, J. Allred, V. Natoli, and D. Richie, “Exploring New Architectures in Accelerating CFD for Air Force Applications,” Proceedings of the DoD HPCMP User Group Conference, Seattle, Washington, January 2008.  (492.86 KB)
Fagg, G., E. Gabriel, G. Bosilca, T. Angskun, Z. Chen, J. Pjesivac–Grbovic, K. London, and J. Dongarra, “Extending the MPI Specification for Process Fault Tolerance on High Performance Computing Systems,” Proceedings of ISC2004 (to appear), Heidelberg, Germany, June 2004.  (548.38 KB)
Bassi, A., M. Beck, G. Fagg, T. Moore, J. Plank, M. Swany, and R. Wolski, “The Internet BackPlane Protocol: A Study in Resource Sharing,” Proceedings of the second IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGRID 2002), Berlin, Germany, October 2002.
Portillo, R., P. J. Teller, D. Cronk, and S. Moore, “Making Performance Analysis and Tuning Part of the Software Development Cycle,” Proceedings of DoD HPCMP UGC 2009, San Diego, CA, IEEE, June 2009.

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