Publications

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A
Jagode, H., A. Danalis, G. Bosilca, and J. Dongarra, Accelerating NWChem Coupled Cluster through dataflow-based Execution,” 11th International Conference on Parallel Processing and Applied Mathematics (PPAM 2015), Krakow, Poland, Springer International Publishing, September 2015.  (452.82 KB)
Jagode, H., A. Danalis, and J. Dongarra, Accelerating NWChem Coupled Cluster through dataflow-based Execution,” The International Journal of High Performance Computing Applications, vol. 32, issue 4, pp. 540--551, July 2018.  (1.68 MB)
Jagode, H., A. Danalis, and J. Dongarra, Accelerating NWChem Coupled Cluster through Dataflow-Based Execution,” The International Journal of High Performance Computing Applications, pp. 1–13, January 2017.  (4.07 MB)
Seo, S., A. Amer, P. Balaji, C. Bordage, G. Bosilca, A. Brooks, P. Carns, A. Castello, D. Genet, T. Herault, et al., Argobots: A Lightweight Low-Level Threading and Tasking Framework,” IEEE Transactions on Parallel and Distributed Systems, October 2017.
B
Dongarra, J., E. Jeannot, E. Saule, and Z. Shi, Bi-objective Scheduling Algorithms for Optimizing Makespan and Reliability on Heterogeneous Systems,” 19th ACM Symposium on Parallelism in Algorithms and Architectures (SPAA) (submitted), San Diego, CA, June 2007.  (223.82 KB)
C
Terpstra, D., H. Jagode, H. You, and J. Dongarra, Collecting Performance Data with PAPI-C,” Tools for High Performance Computing 2009, 3rd Parallel Tools Workshop, Dresden, Germany, Springer Berlin / Heidelberg, pp. 157-173, 00-2010.  (4.45 MB)
Bosilca, G., C. Coti, T. Herault, P. Lemariner, and J. Dongarra, Constructing Resiliant Communication Infrastructure for Runtime Environments in Advances in Parallel Computing,” Advances in Parallel Computing - Parallel Computing: From Multicores and GPU's to Petascale, vol. 19, pp. 441-451, 2010.
Bouteiller, A., T. Herault, G. Bosilca, and J. Dongarra, Correlated Set Coordination in Fault Tolerant Message Logging Protocols,” Proceedings of 17th International Conference, Euro-Par 2011, Part II, vol. 6853, Bordeaux, France, Springer, pp. 51-64, August 2011.  (486.68 KB)
Jia, Y., P. Luszczek, G. Bosilca, and J. Dongarra, CPU-GPU Hybrid Bidiagonal Reduction With Soft Error Resilience,” ScalA '13 Proceedings of the Workshop on Latest Advances in Scalable Algorithms for Large-Scale Systems, Montpellier, France, November 2013.  (238.58 KB)
Jagode, H., and J. Hein, Custom assignment of MPI ranks for parallel multi-dimensional FFTs: Evaluation of BG/P versus BG/L,” Proceedings of the 2008 IEEE International Symposium on Parallel and Distributed Processing with Applications (ISPA-08), Sydney, Australia, IEEE Computer Society, pp. 271-283, January 2008.  (2.6 MB)
D
Jagode, H., Dataflow Programming Paradigms for Computational Chemistry Methods,” Innovative Computing Laboratory Technical Report, no. ICL-UT-17-01, Knoxville, TN, University of Tennessee, May 2017.
Roche, K., and J. Dongarra, Deploying Parallel Numerical Library Routines to Cluster Computing in a Self Adapting Fashion,” Parallel Computing: Advances and Current Issues:Proceedings of the International Conference ParCo2001, London, England, Imperial College Press, January 2002.  (381.89 KB)
E
Beck, M., T. Moore, L. Abrahamsson, C. Achouiantz, and P. Johansson, Enabling Full Service Surrogates Using the Portable Channel Representation,” Tenth International World Wide Web Conference Proceedings (to appear),, Hong Kong, May 2001.  (267.23 KB)
Jagode, H., A. Danalis, R. Hoque, M. Faverge, and J. Dongarra, Evaluation of Dataflow Programming Models for Electronic Structure Theory,” Concurrency and Computation: Practice and Experience: Special Issue on Parallel and Distributed Algorithms, vol. 2018, issue e4490, pp. 1–20, May 2018.  (1.69 MB)
M. Lopez, G., W. Joubert, V. Larrea, O. Hernandez, A. Haidar, S. Tomov, and J. Dongarra, Evaluation of Directive-Based Performance Portable Programming Models,” International Journal of High Performance Computing and Networking (to appear), 2019.
M. Lopez, G., V. Larrea, W. Joubert, O. Hernandez, A. Haidar, S. Tomov, and J. Dongarra, Evaluation of Directive-based Performance Portable Programming Models,” International Journal of High Performance Computing and Networking (IJHPCN), vol. (In Press), 2017.
F
Fagg, G., A. Bukovsky, and J. Dongarra, Fault Tolerant MPI for the HARNESS Meta-Computing System,” Proceedings of International Conference of Computational Science - ICCS 2001, Lecture Notes in Computer Science, vol. 2073, Berlin, Springer Verlag, pp. 355-366, 00-2001.
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Wu, W., G. Bosilca, R. vandeVaart, S. Jeaugey, and J. Dongarra, GPU-Aware Non-contiguous Data Movement In Open MPI,” 25th International Symposium on High-Performance Parallel and Distributed Computing (HPDC'16), Kyoto, Japan, ACM, June 2016.  (482.32 KB)
Berman, F., A. Chien, K. Cooper, J. Dongarra, I. Foster, D. Gannon, L. Johnsson, K. Kennedy, C. Kesselman, J. Mellor-Crummey, et al., The GrADS Project: Software Support for High-Level Grid Application Development,” International Journal of High Performance Applications and Supercomputing, vol. 15, no. 4, pp. 327-344, January 2001.  (271.52 KB)
Berman, F., A. Chien, K. Cooper, J. Dongarra, I. Foster, D. Gannon, L. Johnsson, K. Kennedy, C. Kesselman, D. Reed, et al., The GrADS Project: Software Support for High-Level Grid Application Development,” Technical Report, February 2000.  (347.41 KB)
Miller, M., C. Moulding, J. Dongarra, and C. Johnson, Grid-Enabling Problem Solving Environments: A Case Study of SCIRUN and NetSolve,” Proceedings of the High Performance Computing Symposium (HPC 2001) in 2001 Advanced Simulation Technologies Conference, Seattle, Washington, Society for Modeling and Simulation International, April 2001.  (144.19 KB)
H
Jia, Y., P. Luszczek, and J. Dongarra, Hessenberg Reduction with Transient Error Resilience on GPU-Based Hybrid Architectures,” 30th IEEE International Parallel & Distributed Processing Symposium (IPDPS), Chicago, IL, IEEE, May 2016.  (535.72 KB)
Newburn, C. J., G. Bansal, M. Wood, L. Crivelli, J. Planas, A. Duran, P. Souza, L. Borges, P. Luszczek, S. Tomov, et al., Heterogeneous Streaming,” The Sixth International Workshop on Accelerators and Hybrid Exascale Systems (AsHES), IPDPS 2016, Chicago, IL, IEEE, May 2016.  (2.73 MB)
Dongarra, J., M. Faverge, T. Herault, M. Jacquelin, J. Langou, and Y. Robert, Hierarchical QR Factorization Algorithms for Multi-core Cluster Systems,” Parallel Computing, vol. 39, issue 4-5, pp. 212-232, May 2013.  (1.43 MB)
Jagode, H., J. Dongarra, S. Alam, J. Vetter, W.. Spear, and A. Maloney, A Holistic Approach for Performance Measurement and Analysis for Petascale Applications,” ICCS 2009 Joint Workshop: Tools for Program Development and Analysis in Computational Science and Software Engineering for Large-Scale Computing, vol. 2009, Baton Rouge, Louisiana, Springer-Verlag Berlin Heidelberg 2009, pp. 686-695, May 2009.  (3.96 MB)
Haidar, A., J. Dongarra, K. Kabir, M. Gates, P. Luszczek, S. Tomov, and Y. Jia, HPC Programming on Intel Many-Integrated-Core Hardware with MAGMA Port to Xeon Phi,” Scientific Programming, vol. 23, issue 1, January 2015.  (553.94 KB)
I
Alam, S., R. F. Barrett, H. Jagode, J. A.. Kuehn, S. W. Poole, and R.. Sankaran, Impact of Quad-core Cray XT4 System and Software Stack on Scientific Computation,” Euro-Par 2009, Lecture Notes in Computer Science, vol. 5704/2009, Delft, The Netherlands, Springer Berlin / Heidelberg, pp. 334-344, August 2009.  (312.74 KB)
Kurzak, J., R. Nath, P. Du, and J. Dongarra, An Implementation of the Tile QR Factorization for a GPU and Multiple CPUs,” Applied Parallel and Scientific Computing, vol. 7133, pp. 248-257, 00-2012.  (623.5 KB)
Jeannot, E., K. Seymour, A. YarKhan, and J. Dongarra, Improved Runtime and Transfer Time Prediction Mechanisms in a Network Enabled Server,” Parallel Processing Letters, vol. 17, no. 1, pp. 47-59, March 2006.  (718.4 KB)
Jeannot, E., K. Seymour, A. YarKhan, and J. Dongarra, Improved Runtime and Transfer Time Prediction Mechanisms in a Network Enabled Servers Middleware,” Parallel Processing Letters, vol. 17, no. 1, pp. 47-59, March 2007.  (718.4 KB)
Haidar, A., H. Jagode, P. Vaccaro, A. YarKhan, S. Tomov, and J. Dongarra, Investigating Power Capping toward Energy-Efficient Scientific Applications,” Concurrency Computation: Practice and Experience, vol. 2018, issue e4485, pp. 1–14, April 2018.  (1.2 MB)
Jagode, H., S. Moore, D. Terpstra, J. Dongarra, A. Knuepfer, M. Jurenz, M. S. Mueller, and W. E. Nagel, I/O Performance Analysis for the Petascale Simulation Code FLASH,” ISC'09, Hamburg, Germany, June 2009.  (88.88 KB)
Jagode, H., S. Moore, D. Terpstra, J. Dongarra, A. Knuepfer, M. Jurenz, M. S. Mueller, and W. E. Nagel, I/O Performance Analysis for the Petascale Simulation Code FLASH,” ISC'09, Hamburg, Germany, June 2009.  (88.88 KB)
M
Weaver, V. M., M. Johnson, K. Kasichayanula, J. Ralph, P. Luszczek, D. Terpstra, and S. Moore, Measuring Energy and Power with PAPI,” International Workshop on Power-Aware Systems and Architectures, Pittsburgh, PA, September 2012.  (146.79 KB)
Supinski, B. R. de, S. Alam, D. Bailey, L. Carrington, C. Daley, A. Dubey, T. Gamblin, D. Gunter, P. D. Hovland, H. Jagode, et al., Modeling the Office of Science Ten Year Facilities Plan: The PERI Architecture Tiger Team,” SciDAC 2009, Journal of Physics: Conference Series, vol. 180(2009)012039, San Diego, California, IOP Publishing, July 2009.  (906.39 KB)
N
Berman, F., H. Casanova, A. Chien, K. Cooper, H. Dail, A. Dasgupta, W. Deng, J. Dongarra, L. Johnsson, K. Kennedy, et al., New Grid Scheduling and Rescheduling Methods in the GrADS Project,” International Journal of Parallel Programming, vol. 33, no. 2: Springer, pp. 209-229, June 2005.  (306.41 KB)
P
Johnson, M., H. McCraw, S. Moore, P. Mucci, J. Nelson, D. Terpstra, V. M. Weaver, and T. Mohan, PAPI-V: Performance Monitoring for Virtual Machines,” CloudTech-HPC 2012, Pittsburgh, PA, September 2012.  (2.69 MB)
Maloney, A., S. Biersdorff, S. Shende, H. Jagode, S. Tomov, G. Juckeland, R. Dietrich, D. Poole, and C. Lamb, Parallel Performance Measurement of Heterogeneous Parallel Systems with GPUs,” International Conference on Parallel Processing (ICPP'11), Taipei, Taiwan, September 2011.  (1.41 MB)
Maloney, A., S. Biersdorff, S. Shende, H. Jagode, S. Tomov, G. Juckeland, R. Dietrich, D. Poole, and C. Lamb, Parallel Performance Measurement of Heterogeneous Parallel Systems with GPUs,” International Conference on Parallel Processing (ICPP'11), Taipei, Taiwan, September 2011.  (1.41 MB)
Jia, Y., G. Bosilca, P. Luszczek, and J. Dongarra, Parallel Reduction to Hessenberg Form with Algorithm-Based Fault Tolerance,” International Conference for High Performance Computing, Networking, Storage and Analysis, IEEE-SC 2013, Denver, CO, November 2013.  (147.09 KB)
Danalis, A., H. Jagode, G. Bosilca, and J. Dongarra, PaRSEC in Practice: Optimizing a Legacy Chemistry Application through Distributed Task-Based Execution,” 2015 IEEE International Conference on Cluster Computing, Chicago, IL, IEEE, September 2015.  (1.77 MB)
Dongarra, J., M. Gates, A. Haidar, Y. Jia, K. Kabir, P. Luszczek, and S. Tomov, Portable HPC Programming on Intel Many-Integrated-Core Hardware with MAGMA Port to Xeon Phi,” PPAM 2013, Warsaw, Poland, September 2013.  (284.97 KB)
Jagode, H., A. YarKhan, A. Danalis, and J. Dongarra, Power Management and Event Verification in PAPI,” Tools for High Performance Computing 2015: Proceedings of the 9th International Workshop on Parallel Tools for High Performance Computing, September 2015, Dresden, Germany, Dresden, Germany, Springer International Publishing, pp. pp. 41-51, 2016.  (565.14 KB)
Haidar, A., H. Jagode, A. YarKhan, P. Vaccaro, S. Tomov, and J. Dongarra, Power-aware Computing: Measurement, Control, and Performance Analysis for Intel Xeon Phi,” 2017 IEEE High Performance Extreme Computing Conference (HPEC'17), Best Paper Finalist, Waltham, MA, IEEE, September 2017.  (908.84 KB)
Zunger, A., A. Franceschetti, G. Bester, W. B. Jones, K. Kim, P. A. Graf, L-W. Wang, A. Canning, O. Marques, C. Voemel, et al., Predicting the electronic properties of 3D, million-atom semiconductor nanostructure architectures,” J. Phys.: Conf. Ser. 46, vol. :101088/1742-6596/46/1/040, pp. 292-298, January 2006.  (644.1 KB)
S
Jagode, H., A. Danalis, H. Anzt, I. Yamazaki, M. Hoemmen, E. Boman, S. Tomov, and J. Dongarra, Software-Defined Events (SDEs) in MAGMA-Sparse,” Innovative Computing Laboratory Technical Report, no. ICL-UT-18-12: University of Tennessee, December 2018.  (481.69 KB)
T
Jagode, H., J. Hein, and A. Trew, Task placement of parallel multi-dimensional FFTs on a mesh communication network,” University of Tennessee Computer Science Technical Report, no. UT-CS-08-613, January 2008.  (2.33 MB)
Kennedy, K., B. Broom, K. Cooper, J. Dongarra, R. Fowler, D. Gannon, L. Johnsson, J. Mellor-Crummey, and L. Torczon, Telescoping Languages: A Strategy for Automatic Generation of Scientific Problem-Solving Systems from Annotated Libraries,” Journal of Parallel and Distributed Computing, vol. 61, no. 12, pp. 1803-1826, December 2001.  (386.37 KB)
Bosilca, G., D. Genet, R. Harrison, T. Herault, M. Mahdi Javanmard, C. Peng, and E. Valeev, Tensor Contraction on Distributed Hybrid Architectures using a Task-Based Runtime System,” Innovative Computing Laboratory Technical Report, no. ICL-UT-18-13: University of Tennessee, December 2018.  (326.11 KB)
Kennedy, K., J. Mellor-Crummey, K. Cooper, L. Torczon, F. Berman, A. Chien, D. Angulo, I. Foster, D. Gannon, L. Johnsson, et al., Toward a Framework for Preparing and Executing Adaptive Grid Programs,” International Parallel and Distributed Processing Symposium: IPDPS 2002 Workshops, Fort Lauderdale, FL, pp. 0171, April 2002.  (64.5 KB)

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