Publications

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Conference Paper
Yamazaki, I., A. Abdelfattah, A. Ida, S. Ohshima, S. Tomov, R. Yokota, and J. Dongarra, Analyzing Performance of BiCGStab with Hierarchical Matrix on GPU Clusters,” IEEE International Parallel and Distributed Processing Symposium (IPDPS), Vancouver, BC, Canada, IEEE, May 2018.  (1.37 MB)
Conference Proceedings
Haidar, A., L. Giraud, H. Ben-Hadj-Ali, F. Sourbier, S. Operto, and J. Virieux, 3-D parallel frequency-domain visco-acoustic wave modelling based on a hybrid direct/iterative solver,” 73rd EAGE Conference & Exhibition incorporating SPE EUROPEC 2011, Vienna, Austria, 23-26 May, 00 2011.
Supinski, B. R. de, S. Alam, D. Bailey, L. Carrington, C. Daley, A. Dubey, T. Gamblin, D. Gunter, P. D. Hovland, H. Jagode, et al., Modeling the Office of Science Ten Year Facilities Plan: The PERI Architecture Tiger Team,” SciDAC 2009, Journal of Physics: Conference Series, vol. 180(2009)012039, San Diego, California, IOP Publishing, July 2009.  (906.39 KB)
Supinski, B. R. de, S. Alam, D. Bailey, L. Carrington, C. Daley, A. Dubey, T. Gamblin, D. Gunter, P. D. Hovland, H. Jagode, et al., Modeling the Office of Science Ten Year Facilities Plan: The PERI Architecture Tiger Team,” SciDAC 2009, Journal of Physics: Conference Series, vol. 180(2009)012039, San Diego, California, IOP Publishing, July 2009.  (906.39 KB)
Ramakrishan, L., D. Nurmi, A. Mandal, C. Koelbel, D. Gannon, M. Huang, Y-S. Kee, G. Obertelli, K. Thyagaraja, R. Wolski, et al., VGrADS: Enabling e-Science Workflows on Grids and Clouds with Fault Tolerance,” SC’09 The International Conference for High Performance Computing, Networking, Storage and Analysis (to appear), Portland, OR, 00 2009.  (648.82 KB)
Journal Article
Agarwal, P., R. A.. Alexander, E.. Apra, S. Balay, A. S. Bland, J. Colgan, E. D'Azevedo, J. Dongarra, T. Dunigan, M. Fahey, et al., Cray X1 Evaluation Status Report,” Oak Ridge National Laboratory Report, vol. /-2004/13, January 2004.  (817.33 KB)
Hiroyasu, T., M. Miki, S. Ogura, K. Aoi, T. Yoshida, Y. Okamoto, and J. Dongarra, Energy Minimization of Protein Tertiary Structure by Parallel Simulated Annealing using Genetic Crossover,” Special Issue on Biological Applications of Genetic and Evolutionary Computation (submitted), March 2003.  (438.68 KB)
Hiroyasu, T., M. Miki, S. Ogura, K. Aoi, T. Yoshida, Y. Okamoto, and J. Dongarra, Energy Minimization of Protein Tertiary Structure by Parallel Simulated Annealing using Genetic Crossover,” Special Issue on Biological Applications of Genetic and Evolutionary Computation (submitted), March 2003.  (438.68 KB)
Dongarra, J., and P. Luszczek, How Elegant Code Evolves With Hardware: The Case Of Gaussian Elimination,” in Beautiful Code Leading Programmers Explain How They Think (Chapter 14), pp. 243-282, January 2008.  (257 KB)
Dongarra, J., and P. Luszczek, How Elegant Code Evolves With Hardware: The Case Of Gaussian Elimination,” in Beautiful Code Leading Programmers Explain How They Think: O'Reilly Media, Inc., June 2007.  (257 KB)
Hori, A., E. Jeannot, G. Bosilca, T. Ogura, B. Gerofi, J. Yin, and Y. Ishikawa, An international survey on MPI users,” Parallel Computing, vol. 108, December 2021, To appear. DOI: 10.1016/j.parco.2021.102853  (762.54 KB)
Beck, M., D. Arnold, A. Bassi, F. Berman, H. Casanova, J. Dongarra, T. Moore, G. Obertelli, J. Plank, M. Swany, et al., Logistical Computing and Internetworking: Middleware for the Use of Storage in Communication,” submitted to SC2001, Denver, Colorado, November 2001.  (41.79 KB)
Beck, M., D. Arnold, A. Bassi, F. Berman, H. Casanova, J. Dongarra, T. Moore, G. Obertelli, J. Plank, M. Swany, et al., Middleware for the Use of Storage in Communication,” Parallel Computing, vol. 28, no. 12, pp. 1773-1788, August 2002.  (87.97 KB)
Berman, F., H. Casanova, A. Chien, K. Cooper, H. Dail, A. Dasgupta, W. Deng, J. Dongarra, L. Johnsson, K. Kennedy, et al., New Grid Scheduling and Rescheduling Methods in the GrADS Project,” International Journal of Parallel Programming, vol. 33, no. 2: Springer, pp. 209-229, June 2005.  (306.41 KB)
Dongarra, J., D. Laforenza, and S.. Orlando, Recent Advances in Parallel Virtual Machine and Message Passing Interface,” Lecture Notes in Computer Science, vol. 2840: Springer-Verlag, Berlin, January 2003.
Choi, J., J. Demmel, I. Dhillon, J. Dongarra, S. Ostrouchov, A. Petitet, K. Stanley, D. Walker, and C. Whaley, ScaLAPACK: A Portable Linear Algebra Library for Distributed Memory Computers - Design Issues and Performance,” Computer Physics Communications, vol. 97, issue 1-2, pp. 1-15, August 1996. DOI: 10.1016/0010-4655(96)00017-3
Sourbier, F., A. Haidar, L. Giraud, H. Ben-Hadj-Ali, S. Operto, and J. Virieux, Three-dimensional parallel frequency-domain visco-acoustic wave modelling based on a hybrid direct/iterative solver.,” To appear in Geophysical Prospecting journal., 00 2011.  (1.04 MB)
Casanova, H., T. Bartol, F. Berman, A. Birnbaum, J. Dongarra, M. Ellisman, M. Faerman, E. Gockay, M. Miller, G. Obertelli, et al., The Virtual Instrument: Support for Grid-enabled Scientific Simulations,” Journal of Parallel and Distributed Computing (submitted), October 2002.  (282.16 KB)
Casanova, H., T. Bartol, F. Berman, A. Birnbaum, J. Dongarra, M. Ellisman, M. Faerman, E. Gockay, M. Miller, G. Obertelli, et al., The Virtual Instrument: Support for Grid-enabled Scientific Simulations,” International Journal of High Performance Computing Applications, vol. 18, no. 1, pp. 3-17, January 2004.  (282.16 KB)
Poster
Hori, A., T. Ogura, B. Gerofi, J. Yin, Y. Ishikawa, E. Jeannot, and G. Bosilca, A Report of the MPI International Survey (Poster) , Austin, TX, EuroMPI/USA '20: 27th European MPI Users' Group Meeting, September 2020.