Publications

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Jagode, H., and J. Hein, Custom assignment of MPI ranks for parallel multi-dimensional FFTs: Evaluation of BG/P versus BG/L,” Proceedings of the 2008 IEEE International Symposium on Parallel and Distributed Processing with Applications (ISPA-08), Sydney, Australia, IEEE Computer Society, pp. 271-283, January 2008.  (2.6 MB)
Jagode, H., A. Danalis, and J. Dongarra, What it Takes to keep PAPI Instrumental for the HPC Community,” 1st Workshop on Sustainable Scientific Software (CW3S19), Collegeville, Minnesota, July 2019.  (50.57 KB)
Jagode, H., A. Danalis, H. Anzt, I. Yamazaki, M. Hoemmen, E. Boman, S. Tomov, and J. Dongarra, Software-Defined Events (SDEs) in MAGMA-Sparse,” Innovative Computing Laboratory Technical Report, no. ICL-UT-18-12: University of Tennessee, December 2018.  (481.69 KB)
Jagode, H., A. Danalis, and J. Dongarra, What it Takes to keep PAPI Instrumental for the HPC Community , Collegeville, MN, The 2019 Collegeville Workshop on Sustainable Scientific Software (CW3S19), July 2019.  (3.29 MB)
Jagode, H., A. Danalis, and J. Dongarra, Accelerating NWChem Coupled Cluster through Dataflow-Based Execution,” The International Journal of High Performance Computing Applications, pp. 1–13, January 2017. DOI: 10.1177/1094342016672543  (4.07 MB)
Jagode, H., S. Moore, D. Terpstra, J. Dongarra, A. Knuepfer, M. Jurenz, M. S. Mueller, and W. E. Nagel, I/O Performance Analysis for the Petascale Simulation Code FLASH,” ISC'09, Hamburg, Germany, June 2009.  (88.88 KB)
Jagode, H., A. Knuepfer, J. Dongarra, M. Jurenz, M. S. Mueller, and W. E. Nagel, Trace-based Performance Analysis for the Petascale Simulation Code FLASH,” Innovative Computing Laboratory Technical Report, no. ICL-UT-09-01, April 2009.  (887.54 KB)
Jagode, H., A. YarKhan, A. Danalis, and J. Dongarra, Power Management and Event Verification in PAPI,” Tools for High Performance Computing 2015: Proceedings of the 9th International Workshop on Parallel Tools for High Performance Computing, September 2015, Dresden, Germany, Dresden, Germany, Springer International Publishing, pp. pp. 41-51, 2016. DOI: 10.1007/978-3-319-39589-0_4  (565.14 KB)
Jagode, H., A. Danalis, and J. Dongarra, Accelerating NWChem Coupled Cluster through dataflow-based Execution,” The International Journal of High Performance Computing Applications, vol. 32, issue 4, pp. 540--551, July 2018. DOI: 10.1177/1094342016672543  (1.68 MB)
Jagode, H., A. Knuepfer, J. Dongarra, M. Jurenz, M. S. Mueller, and W. E. Nagel, Trace-based Performance Analysis for the Petascale Simulation Code FLASH,” International Journal of High Performance Computing Applications (to appear), 00 2010.  (887.54 KB)
Jagode, H., A. Danalis, G. Bosilca, and J. Dongarra, Accelerating NWChem Coupled Cluster through dataflow-based Execution,” 11th International Conference on Parallel Processing and Applied Mathematics (PPAM 2015), Krakow, Poland, Springer International Publishing, September 2015.  (452.82 KB)
Jagode, H., Dataflow Programming Paradigms for Computational Chemistry Methods,” Innovative Computing Laboratory Technical Report, no. ICL-UT-17-01, Knoxville, TN, University of Tennessee, May 2017.
Jagode, H., A. Danalis, and J. Dongarra, PAPI's New Software-Defined Events for In-Depth Performance Analysis , Lyon, France, CCDSC 2018: Workshop on Clusters, Clouds, and Data for Scientific Computing, September 2018.
Jagode, H., J. Hein, and A. Trew, Task placement of parallel multi-dimensional FFTs on a mesh communication network,” University of Tennessee Computer Science Technical Report, no. UT-CS-08-613, January 2008.  (2.33 MB)
Jagode, H., A. Danalis, H. Anzt, and J. Dongarra, PAPI Software-Defined Events for in-Depth Performance Analysis,” The International Journal of High Performance Computing Applications, 2019.  (442.39 KB)
Jagode, H., A. Danalis, R. Hoque, M. Faverge, and J. Dongarra, Evaluation of Dataflow Programming Models for Electronic Structure Theory,” Concurrency and Computation: Practice and Experience: Special Issue on Parallel and Distributed Algorithms, vol. 2018, issue e4490, pp. 1–20, May 2018. DOI: 10.1002/cpe.4490  (1.69 MB)
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Hurault, A., and A. YarKhan, Intelligent Service Trading and Brokering for Distributed Network Services in GridSolve,” VECPAR 2010, 9th International Meeting on High Performance Computing for Computational Science, Berkeley, CA, June 2010.  (256.04 KB)
Horton, M., S. Tomov, and J. Dongarra, A Class of Hybrid LAPACK Algorithms for Multicore and GPU Architectures,” Symposium for Application Accelerators in High Performance Computing (SAAHPC'11), Knoxville, TN, July 2011.  (329.68 KB)
Hori, A., Y. Tsujita, A. Shimada, K. Yoshinaga, N. Mitaro, G. Fukazawa, M. Sato, G. Bosilca, A. Bouteiller, and T. Herault, System Software for Many-Core and Multi-core Architecture,” Advanced Software Technologies for Post-Peta Scale Computing: The Japanese Post-Peta CREST Research Project, Singapore, Springer Singapore, pp. 59–75, 2019. DOI: 10.1007/978-981-13-1924-2_4
Hoque, R., T. Herault, G. Bosilca, and J. Dongarra, Dynamic Task Discovery in PaRSEC- A data-flow task-based Runtime,” ScalA17, Denver, ACM, September 2017. DOI: 10.1145/3148226.3148233  (1.15 MB)
Hoemmen, M., and I. Yamazaki, Production Implementations of Pipelined & Communication-Avoiding Iterative Linear Solvers , Tokyo, Japan, SIAM Conference on Parallel Processing for Scientific Computing, March 2018.  (2.34 MB)
Hoefler, T., J. M. Squyres, G. Fagg, G. Bosilca, W. Rehm, and A. Lumsdaine, A New Approach to MPI Collective Communication Implementations,” Distributed and Parallel Systems: Springer US, pp. 45-54, 2007. DOI: 10.1007/978-0-387-69858-8_5  (140.2 KB)
Hoefler, T., Y-S. Dai, and J. Dongarra, Towards Efficient MapReduce Using MPI,” Lecture Notes in Computer Science, Recent Advances in Parallel Virtual Machine and Message Passing Interface - 16th European PVM/MPI Users' Group Meeting, vol. 5759, Espoo, Finland, Springer Berlin / Heidelberg, pp. 240-249, 00 2009.
Hiroyasu, T., M. Miki, M. Sano, H. Shimosaka, S. Tsutsui, and J. Dongarra, Distributed Probablistic Model-Building Genetic Algorithm,” Lecture Notes in Computer Science, vol. 2723: Springer-Verlag, Heidelberg, pp. 1015-1028, January 2003.  (288.91 KB)
Hiroyasu, T., M. Miki, H. Shimosaka, Y. Tanimura, and J. Dongarra, Optimization System Using Grid RPC,” Meeting of the Japan Society of Mechanical Engineers, Kyoto University, Kyoto, Japan, October 2002.
Hiroyasu, T., M. Miki, H. Shimosaka, M. Sano, Y. Tanimura, Y. Mimura, S. Yoshimura, and J. Dongarra, Truss Structural Optimization Using NetSolve System,” Meeting of the Japan Society of Mechanical Engineers, Kyoto University, Kyoto, Japan, October 2002.  (450.65 KB)
Hiroyasu, T., M. Miki, J. Sawada, and J. Dongarra, Optimization of Injection Schedule of Diesel Engine Using GridRPC,” Information Processing Society of Japan Symposium Series, vol. 2003, no. 14, pp. 189-197, January 2003.  (520.96 KB)
Hiroyasu, T., M. Miki, S. Ogura, K. Aoi, T. Yoshida, Y. Okamoto, and J. Dongarra, Energy Minimization of Protein Tertiary Structure by Parallel Simulated Annealing using Genetic Crossover,” Special Issue on Biological Applications of Genetic and Evolutionary Computation (submitted), March 2003.  (438.68 KB)
Hiroyasu, T., M. Miki, H. Shimosaka, and J. Dongarra, Optimization Problem Solving System using Grid RPC,” 3rd IEEE/ACM International Symposium on Cluster Computing and the Grid, Tokyo, Japan, March 2003.  (71.6 KB)
Hiroyasu, T., M. Miki, K. Kodama, J. Uekawa, and J. Dongarra, A Simple Installation and Administration Tool for Large-scaled PC Cluster System,” ClusterWorld Conference and Expo, San Jose, CA, March 2003.  (275.97 KB)
Hiroyasu, T., M. Miki, H. Saito, Y. Tanimura, and J. Dongarra, Static Scheduling for ScaLAPACK on the Grid Using Genetic Algorithm,” Information Processing Society of Japan Symposium Series, vol. 2003, no. 14, pp. 3-10, January 2003.  (506.42 KB)
Herrmann, J., G. Bosilca, T. Herault, L. Marchal, Y. Robert, and J. Dongarra, Assessing the Cost of Redistribution followed by a Computational Kernel: Complexity and Performance Results,” Parallel Computing, vol. 52, pp. 22-41, February 2016. DOI: doi:10.1016/j.parco.2015.09.005  (2.06 MB)
Heroux, M. A., and J. Dongarra, Toward a New Metric for Ranking High Performance Computing Systems,” SAND2013 - 4744, June 2013.  (225.32 KB)
Hernandez, O., F. Song, B. Chapman, J. Dongarra, B. Mohr, S. Moore, and F. Wolf, Performance Instrumentation and Compiler Optimizations for MPI/OpenMP Applications,” Second International Workshop on OpenMP, Reims, France, January 2006.  (350.9 KB)
Hernandez, O., F. Song, B. Chapman, J. Dongarra, B. Mohr, S. Moore, and F. Wolf, Performance Instrumentation and Compiler Optimizations for MPI/OpenMP Applications,” Lecture Notes in Computer Science, OpenMP Shared Memory Parallel Programming, vol. 4315: Springer Berlin / Heidelberg, 00 2008.  (350.9 KB)
Hermanns, M-A., B. Mohr, and F. Wolf, Event-based Measurement and Analysis of One-sided Communication,” In Proceedings of the European Conference on Parallel Computing (Euro-Par), Lisbon, Portugal, Springer, August 2005.  (403.44 KB)
Herault, T., A. Bouteiller, G. Bosilca, M. Gamell, K. Teranishi, M. Parashar, and J. Dongarra, Practical Scalable Consensus for Pseudo-Synchronous Distributed Systems: Formal Proof,” Innovative Computing Laboratory Technical Report, no. ICL-UT-15-01, April 2015.  (570.97 KB)
Herault, T., Y. Robert, A. Bouteiller, D. Arnold, K. Ferreira, G. Bosilca, and J. Dongarra, Optimal Cooperative Checkpointing for Shared High-Performance Computing Platforms,” 2018 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), Best Paper Award, Vancouver, BC, Canada, IEEE, May 2018. DOI: 10.1109/IPDPSW.2018.00127  (899.3 KB)
Herault, T., Y. Robert, A. Bouteiller, D. Arnold, K. Ferreira, G. Bosilca, and J. Dongarra, Checkpointing Strategies for Shared High-Performance Computing Platforms,” International Journal of Networking and Computing, vol. 9, no. 1, pp. 28–52, 2019.
Herault, T., A. Bouteiller, G. Bosilca, M. Gamell, K. Teranishi, M. Parashar, and J. Dongarra, Practical Scalable Consensus for Pseudo-Synchronous Distributed Systems,” The International Conference for High Performance Computing, Networking, Storage and Analysis (SC15), Austin, TX, ACM, November 2015.  (550.96 KB)
Henry, G., D. Watkins, and J. Dongarra, A Parallel Implementation of the Nonsymmetric QR Algorithm for Disitributed Memory Architectures,” SIAM Journal on Scientific Computing, vol. 16, no. 2, pp. 284-311, October 2002.  (224.7 KB)
Henry, G., D. Watkins, and J. Dongarra, A Parallel Implementation of the Nonsymmetric QR Algorithm for Distributed Memory Architectures,” SIAM Journal on Scientific Computing, vol. 24, no. 1, pp. 284-311, January 2003.  (224.7 KB)
Heinrich, K., M. Berry, J. Dongarra, and S. Vadhiyar, The Semantic Conference Organizer,” Statistical Data Mining and Knowledge Discovery: CRC Press, 00 2003.  (998.12 KB)
Haugen, B., S. Richmond, J. Kurzak, C. A. Steed, and J. Dongarra, Visualizing Execution Traces with Task Dependencies,” 2nd Workshop on Visual Performance Analysis (VPA '15), Austin, TX, ACM, November 2015.  (927.5 KB)
Haugen, B., Performance Analysis and Modeling of Task-Based Runtimes,” Department of Electrical Engineering and Computer Science, vol. PhD, Knoxville, University of Tennessee, May 2016.  (5.14 MB)
Haugen, B., and J. Kurzak, Search Space Pruning Constraints Visualization,” VISSOFT'14: 2nd IEEE Working Conference on Software Visualization, Victoria, BC, Canada, IEEE, September 2014.  (1.32 MB)
Hardt, M., K. Seymour, J. Dongarra, M. Zapf, and N. Ruiter, Interactive Grid-Access Using Gridsolve and Giggle,” Computing and Informatics, vol. 27, no. 2, pp. 233-248,ISSN1335-9150, 00 2008.  (533.4 KB)
Han, L., V. Le Fèvre, L-C. Canon, Y. Robert, and F. Vivien, A Generic Approach to Scheduling and Checkpointing Workflows,” The 47th International Conference on Parallel Processing (ICPP 2018), Eugene, OR, IEEE Computer Society Press, August 2018.  (737.11 KB)
Han, L., V. Le Fèvre, L-C. Canon, Y. Robert, and F. Vivien, A Generic Approach to Scheduling and Checkpointing Workflows,” Int. Journal of High Performance Computing Applications, 2019.  (555.01 KB)
Han, L., L-C. Canon, H. Casanova, Y. Robert, and F. Vivien, Checkpointing Workflows for Fail-Stop Errors,” IEEE Transactions on Computers, vol. 67, issue 8, pp. 1105–1120, August 2018.

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