Publications

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Journal Article
Dongarra, J., M. Gates, A. Haidar, J. Kurzak, P. Luszczek, P. Wu, I. Yamazaki, A. YarKhan, M. Abalenkovs, N. Bagherpour, et al., PLASMA: Parallel Linear Algebra Software for Multicore Using OpenMP,” ACM Transactions on Mathematical Software (to appear), 2019.  (7.5 MB)
Bailey, D., J. Chame, C. Chen, J. Dongarra, M. Hall, J. K. Hollingsworth, P. D. Hovland, S. Moore, K. Seymour, J. Shin, et al., PERI Auto-tuning,” Proc. SciDAC 2008, vol. 125, Seatlle, Washington, Journal of Physics, January 2008.  (873.75 KB)
Bosilca, G., A. Bouteiller, T. Herault, P. Lemariner, N. Ohm Saengpatsa, S. Tomov, and J. Dongarra, Performance Portability of a GPU Enabled Factorization with the DAGuE Framework,” IEEE Cluster: workshop on Parallel Programming on Accelerator Clusters (PPAC), June 2011.  (290.98 KB)
Abdelfattah, A., H. Ltaeif, D. Keyes, and J. Dongarra, Performance optimization of Sparse Matrix-Vector Multiplication for multi-component PDE-based applications using GPUs,” Concurrency and Computation: Practice and Experience, vol. 28, issue 12, pp. 3447 - 3465, May 2016. DOI: 10.1002/cpe.v28.1210.1002/cpe.3874  (3.21 MB)
Yamazaki, I., E. Chow, A. Bouteiller, and J. Dongarra, Performance of Asynchronous Optimized Schwarz with One-sided Communication,” Parallel Computing, vol. 86, pp. 66-81, August 2019. DOI: 10.1016/j.parco.2019.05.004
Hernandez, O., F. Song, B. Chapman, J. Dongarra, B. Mohr, S. Moore, and F. Wolf, Performance Instrumentation and Compiler Optimizations for MPI/OpenMP Applications,” Lecture Notes in Computer Science, OpenMP Shared Memory Parallel Programming, vol. 4315: Springer Berlin / Heidelberg, 00-2008.  (350.9 KB)
Dongarra, J., T. Herault, and Y. Robert, Performance and Reliability Trade-offs for the Double Checkpointing Algorithm,” International Journal of Networking and Computing, vol. 4, no. 1, pp. 32-41, 2014.  (859.04 KB)
Anzt, H., S. Tomov, and J. Dongarra, On the performance and energy efficiency of sparse linear algebra on GPUs,” International Journal of High Performance Computing Applications, October 2016. DOI: 10.1177/1094342016672081
Pjesivac–Grbovic, J., T. Angskun, G. Bosilca, G. Fagg, E. Gabriel, and J. Dongarra, Performance Analysis of MPI Collective Operations,” Cluster computing, vol. 10, no. 2: Springer Netherlands, pp. 127-143, June 2007.  (1018.28 KB)
Pjesivac–Grbovic, J., T. Angskun, G. Bosilca, G. Fagg, E. Gabriel, and J. Dongarra, Performance Analysis of MPI Collective Operations,” Cluster Computing Journal (to appear), January 2005.  (1018.28 KB)
Bosilca, G., A. Bouteiller, A. Danalis, M. Faverge, T. Herault, and J. Dongarra, PaRSEC: Exploiting Heterogeneity to Enhance Scalability,” IEEE Computing in Science and Engineering, vol. 15, issue 6, pp. 36-45, November 2013. DOI: 10.1109/MCSE.2013.98  (2.16 MB)
Anzt, H., E. Chow, and J. Dongarra, ParILUT - A New Parallel Threshold ILU,” SIAM Journal on Scientific Computing, vol. 40, issue 4: SIAM, pp. C503–C519, July 2018. DOI: 10.1137/16M1079506  (19.26 MB)
Youseff, L., K. Seymour, H. You, D. Zagorodnov, J. Dongarra, and R. Wolski, Paravirtualization Effect on Single- and Multi-threaded Memory-Intensive Linear Algebra Software,” Cluster Computing Journal: Special Issue on High Performance Distributed Computing, vol. 12, no. 2: Springer Netherlands, pp. 101-122, 00-2009.  (451.07 KB)
Tisseur, F., and J. Dongarra, Parallelizing the Divide and Conquer Algorithm for the Symmetric Tridiagonal Eigenvalue Problem on Distributed Memory Architectures,” SIAM Journal on Scientific Computing, vol. 6, no. 20, pp. 2223-2236, October 2002.  (321.36 KB)
Baboulin, M., D. Becker, and J. Dongarra, A Parallel Tiled Solver for Symmetric Indefinite Systems On Multicore Architectures,” IPDPS 2012, Shanghai, China, May 2012.  (544.09 KB)
Buttari, A., J. Langou, J. Kurzak, and J. Dongarra, Parallel Tiled QR Factorization for Multicore Architectures,” Concurrency and Computation: Practice and Experience, vol. 20, pp. 1573-1590, January 2008.  (277.92 KB)
Abalenkovs, M., A. Abdelfattah, J. Dongarra, M. Gates, A. Haidar, J. Kurzak, P. Luszczek, S. Tomov, I. Yamazaki, and A. YarKhan, Parallel Programming Models for Dense Linear Algebra on Heterogeneous Systems,” Supercomputing Frontiers and Innovations, vol. 2, no. 4, October 2015. DOI: 10.14529/jsfi1504  (3.68 MB)
Parallel Processing and Applied Mathematics, 9th International Conference, PPAM 2011,” Lecture Notes in Computer Science, vol. 7203, Torun, Poland, 00-2012.
Henry, G., D. Watkins, and J. Dongarra, A Parallel Implementation of the Nonsymmetric QR Algorithm for Disitributed Memory Architectures,” SIAM Journal on Scientific Computing, vol. 16, no. 2, pp. 284-311, October 2002.  (224.7 KB)
Henry, G., D. Watkins, and J. Dongarra, A Parallel Implementation of the Nonsymmetric QR Algorithm for Distributed Memory Architectures,” SIAM Journal on Scientific Computing, vol. 24, no. 1, pp. 284-311, January 2003.  (224.7 KB)
Buttari, A., J. Dongarra, J. Kurzak, and J. Langou, Parallel Dense Linear Algebra Software in the Multicore Era,” in Cyberinfrastructure Technologies and Applications: Nova Science Publishers, Inc., pp. 9-24, 00-2009.
Ltaeif, H., J. Kurzak, and J. Dongarra, Parallel Band Two-Sided Matrix Bidiagonalization for Multicore Architectures,” IEEE Transactions on Parallel and Distributed Systems (to appear), May 2009.  (208.16 KB)
Ltaeif, H., J. Kurzak, and J. Dongarra, Parallel Band Two-Sided Matrix Bidiagonalization for Multicore Architectures,” IEEE Transactions on Parallel and Distributed Systems, pp. 417-423, April 2010.  (208.16 KB)
Petitet, A., H. Casanova, J. Dongarra, Y. Robert, and C. Whaley, Parallel and Distributed Scientific Computing: A Numerical Linear Algebra Problem Solving Environment Designer's Perspective,” Handbook on Parallel and Distributed Processing, January 1999.  (323.01 KB)
Jagode, H., A. Danalis, H. Anzt, and J. Dongarra, PAPI Software-Defined Events for in-Depth Performance Analysis,” The International Journal of High Performance Computing Applications, 2019.  (442.39 KB)
Steen, A J.. van der, and J. Dongarra, Overview of High Performance Computers,” Handbook of Massive Data Sets: Kluwer Academic Publishers, pp. 791-852, January 2001.  (442.71 KB)
Dongarra, J., and A. Lastovetsky, An Overview of Heterogeneous High Performance and Grid Computing,” Engineering the Grid (to appear): Nova Science Publishers, Inc., 00-2004.  (199.93 KB)
Dongarra, J., and A. Lastovetsky, An Overview of Heterogeneous High Performance and Grid Computing,” Engineering the Grid (to appear): Nova Science Publishers, Inc., 00-2004.  (199.93 KB)
Abdelfattah, A., J. Dongarra, D. Keyes, and H. Ltaeif, Optimizing Memory-Bound Numerical Kernels on GPU Hardware Accelerators,” VECPAR 2012, Kobe, Japan, July 2012.  (737.28 KB)
Alvaro, W., J. Kurzak, and J. Dongarra, Optimizing Matrix Multiplication for a Short-Vector SIMD Architecture - CELL Processor,” Parallel Computing, vol. 35, pp. 138-150, 00-2009.  (591.16 KB)
Hiroyasu, T., M. Miki, H. Shimosaka, Y. Tanimura, and J. Dongarra, Optimization System Using Grid RPC,” Meeting of the Japan Society of Mechanical Engineers, Kyoto University, Kyoto, Japan, October 2002.
Shimosaka, H., T. Hiroyasu, M. Miki, and J. Dongarra, Optimization Problem Solving System Using GridRPC,” IEEE Transactions on Parallel and Distributed Systems (submitted), January 2005.  (740.57 KB)
Anzt, H., M. Kreutzer, E. Ponce, G. D. Peterson, G. Wellein, and J. Dongarra, Optimization and Performance Evaluation of the IDR Iterative Krylov Solver on GPUs,” The International Journal of High Performance Computing Applications, vol. 32, no. 2, pp. 220–230, March 2018. DOI: 10.1177/1094342016646844  (2.08 MB)
Chaarawi, M., E. Gabriel, R. Keller, R. L. Graham, G. Bosilca, and J. Dongarra, OMPIO: A Modular Software Architecture for MPI I/O,” 18th EuroMPI, Santorini, Greece, Springer, pp. 81-89, September 2011.
Chaarawi, M., E. Gabriel, R. Keller, R. L. Graham, G. Bosilca, and J. Dongarra, OMPIO: A Modular Software Architecture for MPI I/O,” 18th EuroMPI, Santorini, Greece, Springer, pp. 81-89, September 2011.
Petitet, A., H. Casanova, C. Whaley, J. Dongarra, and Y. Robert, A Numerical Linear Algebra Problem Solving Environment Designer's Perspective (LAPACK Working Note 139),” SIAM Annual Meeting, Atlanta, GA, May 1999.  (319.71 KB)
Dongarra, J., and V. Eijkhout, Numerical Linear Algebra Algorithms and Software,” Journal of Computational and Applied Mathematics, vol. 123, no. 1-2, pp. 489-514, October 1999.  (258.62 KB)
Dongarra, J., and V. Eijkhout, Numerical Linear Algebra,” Encyclopedia of Computer Science and Technology, eds. Kent, A., Williams, J., vol. 41, pp. 207-233, August 1999.  (262 KB)
Browne, S., J. Dongarra, and A. Trefethen, Numerical Libraries and Tools for Scalable Parallel Cluster Computing,” International Journal of High Performance Applications and Supercomputing, vol. 15, no. 2, pp. 175-180, October 2002.  (37.38 KB)
Dongarra, J., S. Moore, and A. Trefethen, Numerical Libraries and Tools for Scalable Parallel Cluster Computing,” International Journal of High Performance Applications and Supercomputing, vol. 15, no. 2, pp. 175-180, January 2001.  (37.38 KB)
Browne, S., J. Dongarra, and A. Trefethen, Numerical Libraries and Tools for Scalable Parallel Cluster Computing,” IEEE Cluster Computing BOF at SC99, Portland, Oregon, January 1999.  (37.38 KB)
Petitet, A., S. Blackford, J. Dongarra, B. Ellis, G. Fagg, K. Roche, and S. Vadhiyar, Numerical Libraries and The Grid,” International Journal of High Performance Applications and Supercomputing, vol. 15, no. 4, pp. 359-374, January 2001.  (67.09 KB)
Haidar, A., R. Solcà, M. Gates, S. Tomov, T. C. Schulthess, and J. Dongarra, A Novel Hybrid CPU-GPU Generalized Eigensolver for Electronic Structure Calculations Based on Fine Grained Memory Aware Tasks,” International Journal of High Performance Computing Applications, vol. 28, issue 2, pp. 196-209, May 2014. DOI: 10.1177/1094342013502097  (1.74 MB)
Solcà, R., A. Haidar, S. Tomov, J. Dongarra, and T. C. Schulthess, A Novel Hybrid CPU-GPU Generalized Eigensolver for Electronic Structure Calculations Based on Fine Grained Memory Aware Tasks,” Supercomputing '12 (poster), Salt Lake City, Utah, November 2012.
Dongarra, J., A Not So Simple Matter of Software,” NCSA Access Online: NCSA, 00-2005.  (457.69 KB)
Yamazaki, I., S. Tomov, and J. Dongarra, Non-GPU-resident Dense Symmetric Indefinite Factorization,” Concurrency and Computation: Practice and Experience, November 2016. DOI: 10.1002/cpe.4012
Berman, F., H. Casanova, A. Chien, K. Cooper, H. Dail, A. Dasgupta, W. Deng, J. Dongarra, L. Johnsson, K. Kennedy, et al., New Grid Scheduling and Rescheduling Methods in the GrADS Project,” International Journal of Parallel Programming, vol. 33, no. 2: Springer, pp. 209-229, June 2005.  (306.41 KB)
Dongarra, J., Network-Enabled Solvers: A Step Toward Grid-Based Computing,” SIAM News, vol. 34, no. 10, December 2001.
Agrawal, S., J. Dongarra, K. Seymour, and S. Vadhiyar, NetSolve: Past, Present, and Future - A Look at a Grid Enabled Server,” Making the Global Infrastructure a Reality: Wiley Publishing, 00-2003.  (158.19 KB)
Seymour, K., A. YarKhan, S. Agrawal, and J. Dongarra, NetSolve: Grid Enabling Scientific Computing Environments,” Grid Computing and New Frontiers of High Performance Processing, no. 14: Elsevier, 00-2005.  (425 KB)

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