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Journal Article

Graham, R. L., R. Brightwell, B. Barrett, G. Bosilca, and J. Pjesivac–Grbovic, “An Evaluation of Open MPI's Matching Transport Layer on the Cray XT,” EuroPVM/MPI 2007, September 2007.

(369.01 KB)

Lopez, M. G., W. Joubert, V. Larrea, O. Hernandez, A. Haidar, S. Tomov, and J. Dongarra, “Evaluation of Directive-Based Performance Portable Programming Models,” International Journal of High Performance Computing and Networking, vol. 14, issue 2, pp. 165-182.

(1.12 MB)

Jagode, H., A. Danalis, R. Hoque, M. Faverge, and J. Dongarra, “Evaluation of Dataflow Programming Models for Electronic Structure Theory,” Concurrency and Computation: Practice and Experience: Special Issue on Parallel and Distributed Algorithms, vol. 2018, issue e4490, pp. 1–20, May 2018.

(1.69 MB)

Gabriel, E., G. Fagg, and J. Dongarra, “Evaluating The Performance Of MPI-2 Dynamic Communicators And One-Sided Communication,” Lecture Notes in Computer Science, Recent Advances in Parallel Virtual Machine and Message Passing Interface, 10th European PVM/MPI User's Group Meeting, vol. 2840, Venice, Italy, Springer-Verlag, Berlin, pp. 88-97, September 2003.

(254.08 KB)

Cao, Q., G. Bosilca, N. Losada, W. Wu, D. Zhong, and J. Dongarra, “Evaluating Data Redistribution in PaRSEC,” IEEE Transactions on Parallel and Distributed Systems, vol. 33, no. 8, pp. 1856-1872, August 2022.

(3.19 MB)

Nayak, P., T. Cojean, and H. Anzt, “Evaluating Asynchronous Schwarz Solvers on GPUs,” International Journal of High Performance Computing Applications, August 2020.

Hadri, B., H. Ltaeif, E. Agullo, and J. Dongarra, “Enhancing Parallelism of Tile QR Factorization for Multicore Architectures,” Submitted to Transaction on Parallel and Distributed Systems, December 2009.

(464.23 KB)

Ltaeif, H., P. Luszczek, and J. Dongarra, “Enhancing Parallelism of Tile Bidiagonal Transformation on Multicore Architectures using Tree Reduction,” Lecture Notes in Computer Science, vol. 7203, pp. 661-670, September 2012.

(185.77 KB)

Hiroyasu, T., M. Miki, S. Ogura, K. Aoi, T. Yoshida, Y. Okamoto, and J. Dongarra, “Energy Minimization of Protein Tertiary Structure by Parallel Simulated Annealing using Genetic Crossover,” Special Issue on Biological Applications of Genetic and Evolutionary Computation (submitted), March 2003.

(438.68 KB)

Lively, C., X. Wu, V. Taylor, S. Moore, H-C. Chang, and K. Cameron, “Energy and performance characteristics of different parallel implementations of scientific applications on multicore systems,” International Journal of High Performance Computing Applications, vol. 25, no. 3, pp. 342-350, 00 2011.

(467.18 KB)

Li, Y., A. YarKhan, J. Dongarra, K. Seymour, and A. Hurault, “Enabling Workflows in GridSolve: Request Sequencing and Service Trading,” Journal of Supercomputing, vol. 64, issue 3, pp. 1133-1152, June 2013.

(821.29 KB)

Dongarra, J., and S. Moore, “Empirical Performance Tuning of Dense Linear Algebra Software,” in Performance Tuning of Scientific Applications (to appear), 00 2010.

Kolev, T., P. Fischer, M. Min, J. Dongarra, J. Brown, V. Dobrev, T. Warburton, S. Tomov, M. S. Shephard, A. Abdelfattah, et al., “Efficient exascale discretizations: High-order finite element methods,” The International Journal of High Performance Computing Applications, pp. 10943420211020803, 2021.

Baboulin, M., D. Becker, G. Bosilca, A. Danalis, and J. Dongarra, “An Efficient Distributed Randomized Algorithm for Solving Large Dense Symmetric Indefinite Linear Systems,” Parallel Computing, vol. 40, issue 7, pp. 213-223, July 2014.

(1.42 MB)

Benoit, A., S. K. Raina, and Y. Robert, “Efficient Checkpoint/Verification Patterns,” International Journal on High Performance Computing Applications, July 2015.

(392.76 KB)

Slattery, S. A., K. A. Surjuse, C. Peterson, D. A. Penchoff, and E. Valeev, “Economical Quasi-Newton Unitary Optimization of Electronic Orbitals,” Physical Chemistry Chemical Physics, December 2023, 2024.

Bathie, G., L. Marchal, Y. Robert, and S. Thibault, “Dynamic DAG scheduling under memory constraints for shared-memory platforms,” Int. J. of Networking and Computing, vol. 11, no. 1, pp. 27-49, 2021.

(574.64 KB)

Voemel, C., S. Tomov, and J. Dongarra, “Divide & Conquer on Hybrid GPU-Accelerated Multicore Systems,” SIAM Journal on Scientific Computing (submitted), August 2010.

Voemel, C., S. Tomov, and J. Dongarra, “Divide and Conquer on Hybrid GPU-Accelerated Multicore Systems,” SIAM Journal on Scientific Computing, vol. 34(2), pp. C70-C82, April 2012.

Yamazaki, I., A. Ida, R. Yokota, and J. Dongarra, “Distributed-Memory Lattice H-Matrix Factorization,” The International Journal of High Performance Computing Applications, vol. 33, issue 5, pp. 1046–1063, August 2019.

(1.14 MB)

Boehmann, T. B., “Distributed Storage in RIB,” ICL Tech Report, no. ICL-UT-03-01, March 2003.

(213.02 KB)

Hiroyasu, T., M. Miki, M. Sano, H. Shimosaka, S. Tsutsui, and J. Dongarra, “Distributed Probablistic Model-Building Genetic Algorithm,” Lecture Notes in Computer Science, vol. 2723: Springer-Verlag, Heidelberg, pp. 1015-1028, January 2003.

(288.91 KB)

Dongarra, J., Z. Chen, G. Bosilca, and J. Langou, “Disaster Survival Guide in Petascale Computing: An Algorithmic Approach,” in Petascale Computing: Algorithms and Applications (to appear): Chapman & Hall - CRC Press, 00 2007.

(260.18 KB)

Valeev, E. F., R. J. Harrison, A. A. Holmes, C. C. Peterson, and D. A. Penchoff, “Direct Determination of Optimal Real-Space Orbitals for Correlated Electronic Structure of Molecules,” Journal of Chemical Theory and Computation, vol. 19, issue 20, pp. 7230 - 7241, October 2023.

Kurzak, J., P. Luszczek, I. Yamazaki, Y. Robert, and J. Dongarra, “Design and Implementation of the PULSAR Programming System for Large Scale Computing,” Supercomputing Frontiers and Innovations, vol. 4, issue 1, 2017.

(764.96 KB)

D'Azevedo, E., and J. Dongarra, “The Design and Implementation of the Parallel Out of Core ScaLAPACK LU, QR, and Cholesky Factorization Routines,” Concurrency: Practice and Experience, vol. 12, no. 15, pp. 1481-1493, January 2000.

(374.18 KB)

Casanova, H., J. Plank, M. Beck, and J. Dongarra, “Deploying Fault-tolerance and Task Migration with NetSolve,” Future Generation Computer Systems, vol. 15, no. 5-6: Elsevier, pp. 745-755, October 1999.

(236 KB)

Kurzak, J., H. Ltaeif, J. Dongarra, and R. M. Badia, “Dependency-Driven Scheduling of Dense Matrix Factorizations on Shared-Memory Systems,” PPAM 2009, Poland, September 2009.

Bosilca, G., A. Bouteiller, A. Danalis, T. Herault, P. Luszczek, and J. Dongarra, “Dense Linear Algebra on Distributed Heterogeneous Hardware with a Symbolic DAG Approach,” Scalable Computing and Communications: Theory and Practice: John Wiley & Sons, pp. 699-735, March 2013.

(1.01 MB)

Dongarra, J., J. Kurzak, P. Luszczek, and S. Tomov, “Dense Linear Algebra on Accelerated Multicore Hardware,” High Performance Scientific Computing: Algorithms and Applications, London, UK, Springer-Verlag, 00 2012.

Pjesivac–Grbovic, J., G. Bosilca, G. Fagg, T. Angskun, and J. Dongarra, “Decision Trees and MPI Collective Algorithm Selection Problem,” Euro-Par 2007, Rennes, France, Springer, pp. 105–115, August 2007.

(552.94 KB)

Dongarra, J., R. Graybill, W. Harrod, R. Lucas, E. Lusk, P. Luszczek, J. McMahon, A. Snavely, J. Vetter, K. Yelick, et al., “DARPA's HPCS Program: History, Models, Tools, Languages,” in Advances in Computers, vol. 72: Elsevier, January 2008.

(3.61 MB)

Bosilca, G., A. Bouteiller, A. Danalis, T. Herault, P. Lemariner, and J. Dongarra, “DAGuE: A generic distributed DAG Engine for High Performance Computing.,” Parallel Computing, vol. 38, no. 1-2: Elsevier, pp. 27-51, 00 2012.

(830.85 KB)

Gruetzmacher, T., T. Cojean, G. Flegar, F. Göbel, and H. Anzt, “A Customized Precision Format Based on Mantissa Segmentation for Accelerating Sparse Linear Algebra,” Concurrency and Computation: Practice and Experience, vol. 40319, issue 262, January 2019.

Mellor-Crummey, J., P. Beckman, J. Dongarra, B. Miller, and K. Yelick, “Creating Software Technology to Harness the Power of Leadership-class Computing Systems,” DOE SciDAC Review (to appear), June 2007.

(617.02 KB)

Agarwal, P., R. A.. Alexander, E.. Apra, S. Balay, A. S. Bland, J. Colgan, E. D'Azevedo, J. Dongarra, T. Dunigan, M. Fahey, et al., “Cray X1 Evaluation Status Report,” Oak Ridge National Laboratory Report, vol. /-2004/13, January 2004.

(817.33 KB)

Aupy, G., A. Benoit, B. Goglin, L. Pottier, and Y. Robert, “Co-Scheduling HPC Workloads on Cache-Partitioned CMP Platforms,” International Journal of High Performance Computing Applications, vol. 33, issue 6, pp. 1221-1239, November 2019.

(930.28 KB)

Aupy, G., A. Benoit, S. Dai, L. Pottier, P. Raghavan, Y. Robert, and M. Shantharam, “Co-Scheduling Amdhal Applications on Cache-Partitioned Systems,” International Journal of High Performance Computing Applications, vol. 32, issue 1, pp. 123–138, January 2018.

(672.52 KB)

Bouteiller, A., T. Herault, G. Bosilca, and J. Dongarra, “Correlated Set Coordination in Fault Tolerant Message Logging Protocols,” Concurrency and Computation: Practice and Experience, vol. 25, issue 4, pp. 572-585, March 2013.

(636.68 KB)

Benoit, A., A. Cavelan, F. Cappello, P. Raghavan, Y. Robert, and H. Sun, “Coping with Silent and Fail-Stop Errors at Scale by Combining Replication and Checkpointing,” Journal of Parallel and Distributed Computing, vol. 122, pp. 209–225, December 2018.

(837 KB)

Arnold, D., S. Vadhiyar, and J. Dongarra, “On the Convergence of Computational and Data Grids,” Parallel Processing Letters, vol. 11, no. 2-3, pp. 187-202, January 2001.

(213.35 KB)

Lemariner, P., G. Bosilca, C. Coti, T. Herault, and J. Dongarra, “Constructing Resilient Communication Infrastructure for Runtime Environments,” ParCo 2009, Lyon France, September 2009.

Bosilca, G., C. Coti, T. Herault, P. Lemariner, and J. Dongarra, “Constructing Resiliant Communication Infrastructure for Runtime Environments in Advances in Parallel Computing,” Advances in Parallel Computing - Parallel Computing: From Multicores and GPU's to Petascale, vol. 19, pp. 441-451, 2010.

Tomov, S., J. Langou, A. Canning, L-W. Wang, and J. Dongarra, “Conjugate-Gradient Eigenvalue Solvers in Computing Electronic Properties of Nanostructure Architectures,” International Journal of Computational Science and Engineering (to appear), January 2005.

(428.21 KB)

Tomov, S., J. Langou, J. Dongarra, A. Canning, and L-W. Wang, “Conjugate-Gradient Eigenvalue Solvers in Computing Electronic Properties of Nanostructure Architectures,” International Journal of Computational Science and Engineering, vol. 2, no. 3/4, pp. 205-212, 00 2006.

(428.21 KB)

Chen, Z., and J. Dongarra, “Condition Numbers of Gaussian Random Matrices,” SIAM Journal on Matrix Analysis and Applications (to appear), January 2005.

(186.46 KB)

Casanova, H., J. Herrmann, and Y. Robert, “Computing the Expected Makespan of Task Graphs in the Presence of Silent Errors,” Parallel Computing, vol. 75, pp. 41–60, July 2018.

(2.56 MB)

Baboulin, M., J. Dongarra, S. Gratton, and J. Langou, “Computing the Conditioning of the Components of a Linear Least-squares Solution,” Numerical Linear Algebra with Applications, vol. 16, no. 7, pp. 517-533, 00 2009.

(374.97 KB)

Baboulin, M., J. Dongarra, S. Gratton, and J. Langou, “Computing the Conditioning of the Components of a Linear Least Squares Solution,” VECPAR '08, High Performance Computing for Computational Science, Toulouse, France, January 2008.

(374.97 KB)

Yamazaki, I., S. Tomov, and J. Dongarra, “Computing Low-rank Approximation of a Dense Matrix on Multicore CPUs with a GPU and its Application to Solving a Hierarchically Semiseparable Linear System of Equations,” Scientific Programming, 2015.

(648.87 KB)

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